scATAnno: Automated Cell Type Annotation for single-cell ATAC-seq Data

Overview

  • About scATAnno
  • Installation

Reference Atlases

  • Reference Atlas

Workflow Details

  • Pipeline Overview
  • Prepare Reference Atlas
  • Process Query Datasets

Algorithms

  • Dimension reduction
  • Cell-type Assignment

Tutorials

  • Case Study Datasets
  • Tutorials
    • PBMC10K Multiome
    • TNBC sample
    • BCC Multiple Samples
scATAnno: Automated Cell Type Annotation for single-cell ATAC-seq Data
  • Tutorials
  • View page source

Tutorials

PBMC10K Multiome:

  • PBMC10K Multiome

TNBC:

  • TNBC sample

BCC:

  • BCC Multiple Samples
    • Part I: First round annotation - Apply Healthy Adult reference atlas to BCC tumor samples
    • Part II: Second round annotation - Apply BCC TIL reference atlas to BCC immune cells
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